Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs77129841 chr3:147822080 G/T 0.000219 171 25.67 25.92 19.15 KM Plot
PCPG rs77130079 chr7:158842317 C/A 0.000211 175 25.47 19.87 41.87 KM Plot
PCPG rs77131854 chr12:56664231 C/T 1.09E-7 177 25.17 27.33 0.8 KM Plot
PCPG rs77168715 chr14:74519976 C/T 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs77189350 chr13:64109313 T/C 6.87E-8 178 25.87 22.63 18.13 KM Plot
PCPG rs77219195 chr7:33734729 A/G 1.15E-7 177 25.28 25.43 19.87 KM Plot
PCPG rs77224156 chr12:124039473 G/T 0.000484 172 25.87 19.2 20.13 KM Plot
PCPG rs77259951 chr7:3358069 A/G 0.000157 178 25.47 22.23 59.77 KM Plot
PCPG rs77346188 chr7:1114023 C/A 0.000233 176 25.87 24.5 49.58 KM Plot
PCPG rs77349333 chr7:33734728 T/C 1.15E-7 177 25.28 25.43 19.87 KM Plot
PCPG rs77351827 chr20:6006041 C/T 0 178 25.47 23.53 2.93 KM Plot
PCPG rs77365751 chr16:71696032 G/C 9.42E-6 174 24.23 32.03 14.5 KM Plot
PCPG rs77377502 chr15:56307889 A/G 7.42E-6 177 24.85 26.53 25.17 KM Plot
PCPG rs77388456 chr8:11305807 C/T 8.04E-6 178 25.53 22.63 14.15 KM Plot
PCPG rs77415512 chr12:56627300 A/G 9.68E-8 178 25.17 29.13 0.8 KM Plot